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Post-Antibiotic Recovery: Rebuilding the Microbiome with Fibre Diversity
The Body Abby Johnston 26/8/26 The Body Abby Johnston 26/8/26

Post-Antibiotic Recovery: Rebuilding the Microbiome with Fibre Diversity

A course of broad-spectrum antibiotics is like a forest fire. It burns down the infection, but it also incinerates the "old growth forest" of your beneficial microbiome. Species like Bifidobacterium and Lactobacillus are often collateral damage.

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The Pact: Sourdough Protocols

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The Body

The Science
Post-Antibiotic Recovery: Rebuilding the Microbiome with Fibre Diversity
Post-Antibiotic Recovery: Rebuilding the Microbiome with Fibre Diversity

A course of broad-spectrum antibiotics is like a forest fire. It burns down the infection, but it also incinerates the "old growth forest" of your beneficial microbiome. Species like Bifidobacterium and Lactobacillus are often collateral damage.

Read more →
The Retrograde Method: Freezing and Toasting for Maximum Prebiotics
The Retrograde Method: Freezing and Toasting for Maximum Prebiotics

This guide details The Retrograde Method—a specific protocol of cooling, freezing, and toasting designed to manipulate starch crystals. It turns a standard slice of sourdough into a high-performance delivery system for Resistant Starch (Type 3).

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Stress Baking Psychology: Mindfulness and Tactile Therapy
Stress Baking Psychology: Mindfulness and Tactile Therapy

"Stress baking" is often dismissed as a quirky coping mechanism or procrastination. But psychologists and occupational therapists view it differently. They see it as a legitimate form of sensory regulation.

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Bioavailability: How Acidity Neutralises Phytic Acid to Unlock Iron & Zinc
Bioavailability: How Acidity Neutralises Phytic Acid to Unlock Iron & Zinc

In raw grains, minerals are locked away behind a chemical defence mechanism designed to prevent digestion. This lock is called Phytic Acid (or phytate). Unless you have the key to open it, you are likely excreting the vast majority of the nutrition you think you are eating.

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The Microbes

The Science
Meet The Yeast: The Sprinter vs. The Marathon Runner
Meet The Yeast: The Sprinter vs. The Marathon Runner

In the world of baking, the word "yeast" is used carelessly. We treat the beige granules in a packet and the wild population in a sourdough starter as if they are the same organism just living at different speeds. They are not.

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Sugar Hunters: How Amylase Unlocks the Grain
Sugar Hunters: How Amylase Unlocks the Grain

Microbes are hungry. To survive, they need sugar. But flour is not sugar. It is starch—long, complex chains of glucose molecules locked together in granules. For a yeast cell, a starch granule is like a boulder. It is too big to eat. Before the yeast can feast, someone has to break the rock. This is the job of Amylase.

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The Invisible War: Phages
The Invisible War: Phages

You can see mold. You can smell kahm yeast. But the most lethal predator in your sourdough starter is entirely invisible. They are Bacteriophages (or simply "Phages"). They are viruses that hunt bacteria. And in the dense microbial city of a sourdough culture, they are the apex predators.

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The Survivor: Lactobacillus plantarum
The Survivor: Lactobacillus plantarum

Lactobacillus plantarum is a survivor. It is the "Navy SEAL" of the lactic acid bacteria. It is found everywhere: in sauerkraut, pickles, kimchi, olive brines, and—crucially—in the most robust sourdough starters.

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The Method

The Science
Troubleshoot: The "Fool's Crumb"
Troubleshoot: The "Fool's Crumb"

In the pursuit of the "Instagram Crumb"—that wild, open lattice of air pockets—many bakers fall into a specific trap. You slice the loaf and see massive, cavernous holes. You celebrate. But when you eat it, the bread is heavy, chewy, and dense.

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Scoring Mechanics: Functional Expansion vs. Decorative Art
Scoring Mechanics: Functional Expansion vs. Decorative Art

Scoring is the act of creating a controlled weakness in the "skin" of the loaf. Without it, the massive pressure of oven spring will find its own way out, usually rupturing the loaf in an ugly "blowout" at the bottom [1]. There are two types of cuts: Functional and Decorative.

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The "Scrapings" Method: Zero Waste Maintenance
The "Scrapings" Method: Zero Waste Maintenance

Standard sourdough maintenance protocols are inherently wasteful. The classic "1:1:1" feeding ratio—where you discard half your starter to feed the rest—is a relic of a time when flour was cheap and understanding of microbiology was poor. Over the course of a year, a conscientious home baker following these rules will throw away kilograms of high-quality grain.

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Tactile Metrics: The Windowpane, The Poke, The Jiggly Test
Tactile Metrics: The Windowpane, The Poke, The Jiggly Test

The only reliable clock is the dough itself. To read it, you must stop looking and start touching. These are the three Tactile Metrics that every sourdough baker must master to judge the invisible biology of the jar.

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The Ingredients

The Science
Milk: The Chemical Softener
Milk: The Chemical Softener

Water is neutral. Milk is complex. By swapping water for milk (as in Shokupan or Sandwich Bread), you introduce three new variables: Fat, Protein (Casein), and Sugar (Lactose).

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Butter: The Gluten Lubricant
Butter: The Gluten Lubricant

Butter is the bridge between bread and pastry. In small amounts, it softens. In large amounts (like Brioche), it transforms the dough into a foam-like structure that is more air than wheat.

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Rice Flour: The Non-Stick Shield
Rice Flour: The Non-Stick Shield

Rice flour is the one flour in your arsenal that should never go inside your wheat dough (unless you are baking gluten-free). Its role is purely external. It is the mechanic’s glove.

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Olive Oil: The Lipid Softener
Olive Oil: The Lipid Softener

Sourdough is traditionally lean (Flour, Water, Salt). When you introduce a lipid like Extra Virgin Olive Oil, you are entering the territory of "Enriched Dough." You are trading some crust crispness for crumb tenderness.

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The Chemistry

The Science
Gas Retention: Why Weak Gluten Networks Leak CO2
Gas Retention: Why Weak Gluten Networks Leak CO2

You can have the most active starter in the world, pumping out massive amounts of Carbon Dioxide (CO2). But if your dough cannot trap that gas, your bread will be a brick. This is the principle of Gas Retention.

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Thermal Death Curves: What Happens at 60°C?
Thermal Death Curves: What Happens at 60°C?

When you slide a loaf into a 250°C oven, you are subjecting the microbial city inside to a rapid climate change. For the first few minutes, the yeast and bacteria actually work faster (the "Oven Spring"). But as the internal temperature rises, they hit a wall. This is the Thermal Death Curve.

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Altitude Baking: Adjusting Pressure Variables
Altitude Baking: Adjusting Pressure Variables

At high altitudes, the air pressure is lower. This invisible change alters the behaviour of every gas bubble and water molecule in your dough. To bake successfully, you must adjust your variables to match your environment.

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The Ear: The Physics of Differential Expansion
The Ear: The Physics of Differential Expansion

The ear is more than decoration. It is functional physics. It is the visual proof that your loaf expanded to its maximum potential before the crust hardened. To get an ear, you must master the forces of Tension and Differential Expansion.

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The industrial food system is broken. We are fixing it, one loaf of sourdough at a time. Join our band of precision bakers re-engineering their gut biomes and their brains.

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Welcome to the Pact: a movement reclaiming metabolic health through the ancient practice of baking sourdough.

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